S - each Sequence of the alignment pair is of type SC - each element of an AlignedSequence is a Compound of type CPairwiseSequenceScorer<S,C>, ScorerFractionalIdentityInProfileScorer, FractionalSimilarityInProfileScorerpublic interface PairInProfileScorer<S extends Sequence<C>,C extends Compound> extends PairwiseSequenceScorer<S,C>
Profile.| Modifier and Type | Method | Description |
|---|---|---|
Profile<S,C> |
getProfile() |
Returns the
Profile from which the aligned pair originated. |
getQuery, getTargetgetDistance, getDistance, getMaxScore, getMinScore, getScore, getSimilarity, getSimilarity