S - each Sequence of the alignment pair is of type SC - each element of an AlignedSequence is a Compound of type CAligner<S,C>, PairwiseSequenceScorer<S,C>, ScorerAbstractPairwiseSequenceAligner, AnchoredPairwiseSequenceAligner, GuanUberbacher, NeedlemanWunsch, SmithWatermanpublic interface PairwiseSequenceAligner<S extends Sequence<C>,C extends Compound> extends Aligner<S,C>, PairwiseSequenceScorer<S,C>
| Modifier and Type | Method | Description |
|---|---|---|
SequencePair<S,C> |
getPair() |
Returns sequence alignment pair.
|
getComputationTime, getProfilegetQuery, getTargetgetDistance, getDistance, getMaxScore, getMinScore, getScore, getSimilarity, getSimilaritySequencePair<S,C> getPair()