S - each Sequence in the pair of alignment Profiles is of type SC - each element of an AlignedSequence is a Compound of type CScorerPartitionRefiner<S,C>, ProfileProfileAligner<S,C>AbstractProfileProfileAligner, SimpleProfileProfileAlignerpublic interface ProfileProfileScorer<S extends Sequence<C>,C extends Compound> extends Scorer
| Modifier and Type | Method | Description |
|---|---|---|
Profile<S,C> |
getQuery() |
Returns the first profile of the pair.
|
Profile<S,C> |
getTarget() |
Returns the second profile of the pair.
|
getDistance, getDistance, getMaxScore, getMinScore, getScore, getSimilarity, getSimilarity