S - each element of an alignment Profile is of type SC - each element of an AlignedSequence is a Compound of type Cjava.lang.Iterable<S>, Profile<S,C>MutableProfilePair<S,C>SimpleProfilePairpublic interface ProfilePair<S extends Sequence<C>,C extends Compound> extends Profile<S,C>
Profiles.Profile.StringFormat| Modifier and Type | Method | Description |
|---|---|---|
Profile<S,C> |
getQuery() |
Returns the first
Profile of the pair. |
Profile<S,C> |
getTarget() |
Returns the second
Profile of the pair. |
getAlignedSequence, getAlignedSequence, getAlignedSequences, getAlignedSequences, getAlignedSequences, getCompoundAt, getCompoundAt, getCompoundCountsAt, getCompoundCountsAt, getCompoundsAt, getCompoundSet, getCompoundWeightsAt, getCompoundWeightsAt, getIndexOf, getIndicesAt, getLastIndexOf, getLength, getOriginalSequences, getSize, getSubProfile, hasGap, isCircular, toString, toString, toString