AminoAcidCompound

java.lang.Object
- org.biojava.nbio.core.sequence.template.AbstractCompound
- - org.biojava.nbio.core.sequence.compound.AminoAcidCompound

All Implemented Interfaces:

java.io.Serializable, Compound
```
public class AminoAcidCompound
extends AbstractCompound
implements java.io.Serializable
```
Used to describe an Amino Acid.

Author:

Richard Holland, Scooter Willis, Andy Yates

See Also:

Serialized Form

Constructor Summary

Constructors
Constructor	Description
`AminoAcidCompound(AminoAcidCompoundSet compoundSet, java.lang.String shortName, java.lang.String longName, java.lang.String description, java.lang.Float molecularWeight)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`boolean`	`equals(java.lang.Object obj)`
`boolean`	`equalsIgnoreCase(Compound compound)`
`CompoundSet<AminoAcidCompound>`	`getCompoundSet()`
`int`	`hashCode()`

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractCompound
getBase, getDescription, getLongName, getMolecularWeight, getShortName, getUpperedBase, setDescription, setLongName, setMolecularWeight, setShortName, toString

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

AminoAcidCompound

public AminoAcidCompound(AminoAcidCompoundSet compoundSet,
                         java.lang.String shortName,
                         java.lang.String longName,
                         java.lang.String description,
                         java.lang.Float molecularWeight)

Method Detail
- equals
```
public boolean equals(java.lang.Object obj)
```
  Overrides:
  
  equals in class AbstractCompound
- hashCode
```
public int hashCode()
```
  Overrides:
  
  hashCode in class AbstractCompound
- equalsIgnoreCase
```
public boolean equalsIgnoreCase(Compound compound)
```
  Specified by:
  
  equalsIgnoreCase in interface Compound
  
  Overrides:
  
  equalsIgnoreCase in class AbstractCompound
- getCompoundSet
```
public CompoundSet<AminoAcidCompound> getCompoundSet()
```

Class AminoAcidCompound

Constructor Summary

Method Summary

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractCompound

Methods inherited from class java.lang.Object

Constructor Detail

AminoAcidCompound

Method Detail

equals

hashCode

equalsIgnoreCase

getCompoundSet