RNASequenceCreator

java.lang.Object
- org.biojava.nbio.core.sequence.io.RNASequenceCreator

All Implemented Interfaces:

SequenceCreatorInterface<NucleotideCompound>
```
public class RNASequenceCreator
extends java.lang.Object
implements SequenceCreatorInterface<NucleotideCompound>
```
Used to create a RNA sequence

Author:

Scooter Willis

Constructor Summary

Constructors
Constructor Description

RNASequenceCreator(CompoundSet<NucleotideCompound> compoundSet)

Constructors
Constructor	Description
`RNASequenceCreator(CompoundSet<NucleotideCompound> compoundSet)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`AbstractSequence<NucleotideCompound>`	`getSequence(java.lang.String sequence, long index)`
`AbstractSequence<NucleotideCompound>`	`getSequence(java.util.List<NucleotideCompound> list)`
`AbstractSequence<NucleotideCompound>`	`getSequence(ProxySequenceReader<NucleotideCompound> proxyLoader, long index)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RNASequenceCreator

public RNASequenceCreator(CompoundSet<NucleotideCompound> compoundSet)

Parameters:: compoundSet -

Method Detail

getSequence

public AbstractSequence<NucleotideCompound> getSequence(java.lang.String sequence,
                                                        long index)
                                                 throws CompoundNotFoundException

Specified by:: getSequence in interface SequenceCreatorInterface<NucleotideCompound>
Parameters:: sequence -; index -
Returns:
Throws:: CompoundNotFoundException

getSequence

public AbstractSequence<NucleotideCompound> getSequence(ProxySequenceReader<NucleotideCompound> proxyLoader,
                                                        long index)

Specified by:: getSequence in interface SequenceCreatorInterface<NucleotideCompound>
Parameters:: proxyLoader -; index -
Returns:

getSequence
```
public AbstractSequence<NucleotideCompound> getSequence(java.util.List<NucleotideCompound> list)
```
Specified by:

getSequence in interface SequenceCreatorInterface<NucleotideCompound>

Parameters:

list -

Returns:

Class RNASequenceCreator

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

RNASequenceCreator

Method Detail

getSequence

getSequence

getSequence