SequenceReader

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Summary:
Nested |
Field |
Constr |
Method

Detail:
Field |
Constr |
Method

All Superinterfaces:

Accessioned, java.lang.Iterable<C>, Sequence<C>

All Known Subinterfaces:

ProxySequenceReader<C>

All Known Implementing Classes:

ArrayListProxySequenceReader, ArrayListSequenceReader, BitSequenceReader, FourBitSequenceReader, GenbankProxySequenceReader, JoiningSequenceReader, RnaSequenceView, SequenceFileProxyLoader, SingleCompoundSequenceReader, StringProxySequenceReader, TwoBitSequenceReader, UniprotProxySequenceReader
```
public interface SequenceReader<C extends Compound>
extends Sequence<C>
```

- Method Summary
  
  All Methods Instance Methods Abstract Methods
  Modifier and Type Method Description
  
  void setCompoundSet(CompoundSet<C> compoundSet)
  
  void setContents(java.lang.String sequence)
  - Methods inherited from interface org.biojava.nbio.core.sequence.template.Accessioned
    getAccession
  - Methods inherited from interface java.lang.Iterable
    forEach, iterator, spliterator
  - Methods inherited from interface org.biojava.nbio.core.sequence.template.Sequence
    countCompounds, getAsList, getCompoundAt, getCompoundSet, getIndexOf, getInverse, getLastIndexOf, getLength, getSequenceAsString, getSubSequence

Method Detail

setCompoundSet

void setCompoundSet(CompoundSet<C> compoundSet)

setContents

void setContents(java.lang.String sequence)
          throws CompoundNotFoundException

Throws:: CompoundNotFoundException

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