Dataset

java.lang.Object
- org.biojava.nbio.phosphosite.Dataset

```
public class Dataset
extends java.lang.Object
```
Phosphosite is available under the PhosphoSitePlus® is licensed under Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License and is freely available for non-commercial purposes from http://www.phosphosite.org/staticDownloads.do Please acknowledge PhosphoSitePlus®, www.phosphosite.org" at appropriate locations. Please cite : “Hornbeck PV, Kornhauser JM, Tkachev S, Zhang B, Skrzypek E, Murray B, Latham V, Sullivan M (2012) PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse. Nucleic Acids Res. 40(Database issue), D261–70.”. Created by ap3 on 31/10/2014.

Field Summary

Fields
Modifier and Type	Field	Description
`static java.lang.String`	`ACETYLATION`
`static java.lang.String`	`DISEASE_ASSOC`
`static java.lang.String`	`METHYLATION`
`static java.lang.String`	`PHOSPHORYLATION`
`static java.lang.String`	`REGULATORY`
`static java.lang.String`	`SUMOYLATION`
`static java.lang.String`	`UBIQUITINATION`

Constructor Summary

Constructors
Constructor Description

Dataset()

Constructors
Constructor	Description
`Dataset()`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`static void`	`copyFile(java.io.File src, java.io.File dst)`
`void`	`download()`
`void`	`downloadFile(java.net.URL u, java.io.File localFile)`
`java.io.File`	`getLocalDir()`
`java.io.File[]`	`getLocalFiles()`
`static void`	`main(java.lang.String[] args)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ACETYLATION

public static final java.lang.String ACETYLATION

See Also:: Constant Field Values

DISEASE_ASSOC

public static final java.lang.String DISEASE_ASSOC

See Also:: Constant Field Values

METHYLATION

public static final java.lang.String METHYLATION

See Also:: Constant Field Values

PHOSPHORYLATION

public static final java.lang.String PHOSPHORYLATION

See Also:: Constant Field Values

REGULATORY

public static final java.lang.String REGULATORY

See Also:: Constant Field Values

SUMOYLATION

public static final java.lang.String SUMOYLATION

See Also:: Constant Field Values

UBIQUITINATION

public static final java.lang.String UBIQUITINATION

See Also:: Constant Field Values

Constructor Detail
- Dataset
```
public Dataset()
```

Method Detail

getLocalFiles

public java.io.File[] getLocalFiles()

getLocalDir
```
public java.io.File getLocalDir()
```

download
```
public void download()
```

downloadFile

public void downloadFile(java.net.URL u,
                         java.io.File localFile)
                  throws java.io.IOException

Throws:: java.io.IOException

copyFile

public static void copyFile(java.io.File src,
                            java.io.File dst)
                     throws java.io.IOException

Throws:: java.io.IOException

main

public static void main(java.lang.String[] args)

Class Dataset

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

ACETYLATION

DISEASE_ASSOC

METHYLATION

PHOSPHORYLATION

REGULATORY

SUMOYLATION

UBIQUITINATION

Constructor Detail

Dataset

Method Detail

getLocalFiles

getLocalDir

download

downloadFile

copyFile

main