Enum Constant Detail

• AMINOACID

  public static final GroupType AMINOACID

  The type for amino acids (L-peptides)

• NUCLEOTIDE

  public static final GroupType NUCLEOTIDE

  The type for nucleotide groups (dna and rna)

• HETATM

  public static final GroupType HETATM

  The type for hetero groups (everything else)

Field Detail

• WATERNAMES

  public static final java.util.List<java.lang.String> WATERNAMES

  The 3-letter codes used in the PDB to identify water molecules

  See Also:

  Group.isWater()

Method Detail

• values

  public static GroupType[] values​()

  Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

  for (GroupType c : GroupType.values())
      System.out.println(c);
  

  Returns:

  an array containing the constants of this enum type, in the order they are declared

• valueOf

  public static GroupType valueOf​(java.lang.String name)

  Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

  Parameters:

  name - the name of the enum constant to be returned.

  Returns:

  the enum constant with the specified name

  Throws:

  java.lang.IllegalArgumentException - if this enum type has no constant with the specified name

  java.lang.NullPointerException - if the argument is null

• toString

  public java.lang.String toString​()

  Overrides:

  toString in class java.lang.Enum<GroupType>

  Returns:

  The name of this GroupType. One of "amino", "nucleotide", or "hetatm"

• getResidueTypes

  public java.util.Set<ResidueType> getResidueTypes​()

  Get a set of ResidueTypes loosely equivalent to this GroupType.

  Because mmCIF and PDB handle modified residues differently, some Groups may have a well-defined ResidueType yet still be HETATMs.

  Returns:

  A Set of ResidueTypes commonly classified as this GroupType