Constructor Detail

• StructureAlignmentFactory

  public StructureAlignmentFactory​()

Method Detail

• addAlgorithm

  public static void addAlgorithm​(StructureAlignment alg)

  Adds a new StructureAlignment algorithm to the list. Only one instance is stored for each algorithmName, so it is possible that a different instance may be returned by getAlgorithm(alg.getAlgorithmName())

  Parameters:

  alg - the alignment algorithm

• removeAlgorithm

  public static boolean removeAlgorithm​(java.lang.String name)

  Removes the specified algorithm from the list of options

  Parameters:

  name - the name of the algorithm to remove

  Returns:

  true if the specified algorithm was found and removed

• clearAlgorithms

  public static void clearAlgorithms​()

  Removes all algorithms from the list

• getAlgorithm

  public static StructureAlignment getAlgorithm​(java.lang.String name)
                                         throws StructureException

  Throws:

  StructureException

• getAllAlgorithms

  public static StructureAlignment[] getAllAlgorithms​()

• getAllAlgorithmNames

  public static java.lang.String[] getAllAlgorithmNames​()