protected static class SmithWatermanUserArgumentProcessor.SmithWatermanStartupParams extends StartupParameters
| Constructor | Description |
|---|---|
SmithWatermanStartupParams() |
| Modifier and Type | Method | Description |
|---|---|---|
short |
getGapExtend() |
|
short |
getGapOpen() |
|
void |
setGapExtend(short gapExtend) |
|
void |
setGapOpen(short gapOpen) |
|
java.lang.String |
toString() |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, waitgetAlignPairs, getCacheFilePath, getFile1, getFile2, getNrCPU, getOutFile, getPdb1, getPdb2, getPdbFilePath, getSaveOutputDir, getSearchFile, getShowDBresult, isAutoFetch, isDomainSplit, isOutputPDB, isPdbDirSplit, isPrintCE, isPrintFatCat, isPrintXML, isShow3d, isShowMenu, setAlignPairs, setAutoFetch, setCacheFilePath, setDomainSplit, setFile1, setFile2, setNrCPU, setOutFile, setOutputPDB, setPdb1, setPdb2, setPdbDirSplit, setPdbFilePath, setPrintCE, setPrintFatCat, setPrintXML, setSaveOutputDir, setSearchFile, setShow3d, setShowDBresult, setShowMenupublic short getGapOpen()
public void setGapOpen(short gapOpen)
public short getGapExtend()
public void setGapExtend(short gapExtend)
public java.lang.String toString()
toString in class StartupParameters