PDBDomainProvider

Skip navigation links

All Classes

SEARCH:

Summary:
Nested |
Field |
Constr |
Method

Detail:
Field |
Constr |
Method

java.lang.Object
- org.biojava.nbio.structure.domain.PDBDomainProvider

All Implemented Interfaces:

DomainProvider
```
public class PDBDomainProvider
extends java.lang.Object
implements DomainProvider
```
Class to fetch domains through the RCSB's REST API.

Author:

Spencer Bliven

Field Summary

Fields
Modifier and Type Field Description

static java.lang.String DEFAULT_PDB_API_URL

static java.lang.String DEFAULT_PDB_HOST

Constructor Summary

Constructors
Constructor Description

PDBDomainProvider()

PDBDomainProvider(java.lang.String base, int cutoff)

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`java.util.SortedSet<java.lang.String>`	`getDomainNames(java.lang.String name)`	Gets a list of domain representatives for a given PDB ID.
`java.util.SortedSet<java.lang.String>`	`getRepresentativeDomains()`	Gets a list of all domain representatives
`static void`	`main(java.lang.String[] args)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - DEFAULT_PDB_HOST
```
public static final java.lang.String DEFAULT_PDB_HOST
```
    See Also:
    
    Constant Field Values
  - DEFAULT_PDB_API_URL
```
public static final java.lang.String DEFAULT_PDB_API_URL
```
    See Also:
    
    Constant Field Values
- Constructor Detail
  - PDBDomainProvider
```
public PDBDomainProvider()
```
  - PDBDomainProvider
```
public PDBDomainProvider(java.lang.String base,
                         int cutoff)
```
    Parameters:
    
    base -
    
    cutoff -
- Method Detail
  - getDomainNames
```
public java.util.SortedSet<java.lang.String> getDomainNames(java.lang.String name)
```
    Gets a list of domain representatives for a given PDB ID.
    
    Specified by:
    
    getDomainNames in interface DomainProvider
    
    Parameters:
    
    name - a structure identifier
    
    Returns:
    
    A list of domain names
  - getRepresentativeDomains
```
public java.util.SortedSet<java.lang.String> getRepresentativeDomains()
```
    Gets a list of all domain representatives
    
    Specified by:
    
    getRepresentativeDomains in interface DomainProvider
    
    Returns:
    
    A full list of all representative domains recognized by this provider
  - main
```
public static void main(java.lang.String[] args)
```

Skip navigation links

All Classes

Summary:
Nested |
Field |
Constr |
Method

Detail:
Field |
Constr |
Method