EcodInstallation.EcodParser

java.lang.Object
- org.biojava.nbio.structure.ecod.EcodInstallation.EcodParser

Enclosing class:: EcodInstallation

public static class EcodInstallation.EcodParser
extends java.lang.Object

Field Summary

Fields
Modifier and Type	Field	Description
`static java.lang.String`	`F_UNCLASSIFIED`	String for unclassified F-groups
`static java.lang.String`	`IS_DOMAIN_ASSEMBLY`	Deprecated way of indicating there is an assembly.
`static java.lang.String`	`IS_REPRESENTATIVE`	Indicates a manual representative
`static java.lang.String`	`NOT_DOMAIN_ASSEMBLY`	String for single-domain assemblies
`static java.lang.String`	`NOT_REPRESENTATIVE`	Indicates not a manual representative

Constructor Summary

Constructors
Constructor	Description
`EcodParser(java.io.BufferedReader reader)`
`EcodParser(java.io.File file)`
`EcodParser(java.io.Reader reader)`
`EcodParser(java.lang.String filename)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type Method Description

java.util.List<EcodDomain> getDomains()

java.lang.String getVersion()
- Methods inherited from class java.lang.Object
  clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`java.util.List<EcodDomain>`	`getDomains()`
`java.lang.String`	`getVersion()`

- Field Detail
  - F_UNCLASSIFIED
```
public static final java.lang.String F_UNCLASSIFIED
```
    String for unclassified F-groups
    
    See Also:
    
    Constant Field Values
  - NOT_DOMAIN_ASSEMBLY
```
public static final java.lang.String NOT_DOMAIN_ASSEMBLY
```
    String for single-domain assemblies
    
    See Also:
    
    Constant Field Values
  - IS_DOMAIN_ASSEMBLY
```
public static final java.lang.String IS_DOMAIN_ASSEMBLY
```
    Deprecated way of indicating there is an assembly. replaced by the assembly id
    
    See Also:
    
    Constant Field Values
  - IS_REPRESENTATIVE
```
public static final java.lang.String IS_REPRESENTATIVE
```
    Indicates a manual representative
    
    See Also:
    
    Constant Field Values
  - NOT_REPRESENTATIVE
```
public static final java.lang.String NOT_REPRESENTATIVE
```
    Indicates not a manual representative
    
    See Also:
    
    Constant Field Values
- Constructor Detail
  - EcodParser
```
public EcodParser(java.lang.String filename)
           throws java.io.IOException
```
    Throws:
    
    java.io.IOException
  - EcodParser
```
public EcodParser(java.io.File file)
           throws java.io.IOException
```
    Throws:
    
    java.io.IOException
  - EcodParser
```
public EcodParser(java.io.Reader reader)
           throws java.io.IOException
```
    Throws:
    
    java.io.IOException
  - EcodParser
```
public EcodParser(java.io.BufferedReader reader)
           throws java.io.IOException
```
    Throws:
    
    java.io.IOException
- Method Detail
  - getDomains
```
public java.util.List<EcodDomain> getDomains()
```
    Returns:
    
    a list of all EcodDomains
  - getVersion
```
public java.lang.String getVersion()
```
    Returns:
    
    the requestedVersion for this file, or null if none was parsed

Class EcodInstallation.EcodParser

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

F_UNCLASSIFIED

NOT_DOMAIN_ASSEMBLY

IS_DOMAIN_ASSEMBLY

IS_REPRESENTATIVE

NOT_REPRESENTATIVE

Constructor Detail

EcodParser

EcodParser

EcodParser

EcodParser

Method Detail

getDomains

getVersion