SequenceFunctionOrderDetector

Skip navigation links

All Classes

SEARCH:

Summary:
Nested |
Field |
Constr |
Method

Detail:
Field |
Constr |
Method

java.lang.Object
- org.biojava.nbio.structure.symmetry.internal.SequenceFunctionOrderDetector

All Implemented Interfaces:

OrderDetector
```
public class SequenceFunctionOrderDetector
extends java.lang.Object
implements OrderDetector
```
Calls Spencer's method for determining order. This method uses the sequence alignment information to guess the order of symmetry.

Since:

4.2.0

Author:

dmyersturnbull

- Constructor Summary
  
  Constructors
  Constructor Description
  
  SequenceFunctionOrderDetector()
  
  SequenceFunctionOrderDetector(int maxSymmetry, float minimumMetricChange)
- Method Summary
  
  All Methods Instance Methods Concrete Methods
  Modifier and Type Method Description
  
  int calculateOrder(AFPChain afpChain, Atom[] ca)
  
  java.lang.String toString()
  - Methods inherited from class java.lang.Object
    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

SequenceFunctionOrderDetector

public SequenceFunctionOrderDetector()

SequenceFunctionOrderDetector

public SequenceFunctionOrderDetector(int maxSymmetry,
                                     float minimumMetricChange)

Method Detail

calculateOrder

public int calculateOrder(AFPChain afpChain,
                          Atom[] ca)
                   throws RefinerFailedException

Specified by:: calculateOrder in interface OrderDetector
Throws:: RefinerFailedException

toString
```
public java.lang.String toString()
```
Overrides:

toString in class java.lang.Object

Skip navigation links

All Classes

Summary:
Nested |
Field |
Constr |
Method

Detail:
Field |
Constr |
Method