pappso::GrpProtein Class Reference

#include <grpprotein.h>

Public Types
typedef std::vector< GrpPeptide * >::const_iterator	const_iterator

Public Member Functions
	GrpProtein (const GrpProtein &other)
	~GrpProtein ()
void	push_back (GrpPeptide *p_grpPeptide)
bool	operator== (const GrpProtein &other) const
const QString &	getAccession () const
const QString &	getDescription () const
const QString	getGroupingId () const
const_iterator	begin () const
const_iterator	end () const
void	setRank (unsigned int i)
void	setGroupNumber (unsigned int i)
void	setSubGroupNumber (unsigned int i)
unsigned int	getGroupNumber () const
unsigned int	getSubGroupNumber () const
unsigned int	getRank () const
unsigned int	getCount () const

Protected Member Functions
	GrpProtein (const QString &accession, const QString &description)
void	countPlus ()
void	strip ()
	ensure that each peptide in peptide list is unique and sorted by pointer adress More...

Protected Attributes
std::vector< GrpPeptide * >	m_grpPeptidePtrList

Private Attributes
unsigned int	m_groupNumber = 0
unsigned int	m_subGroupNumber = 0
unsigned int	m_rank = 0
unsigned int	m_count = 0
const QString	m_accession
const QString	m_description

Friends
class	GrpExperiment

Detailed Description

Definition at line 58 of file grpprotein.h.

Member Typedef Documentation

const_iterator

typedef std::vector<GrpPeptide *>::const_iterator pappso::GrpProtein::const_iterator

Definition at line 94 of file grpprotein.h.

Constructor & Destructor Documentation

GrpProtein() [1/2]

GrpProtein::GrpProtein ( const QString &  accession, const QString &  description  )

protected

Definition at line 32 of file grpprotein.cpp.

  : m_accession(accession.simplified()), m_description(description.simplified())
{

GrpProtein() [2/2]

GrpProtein::GrpProtein

(

const GrpProtein &

other

)

Definition at line 38 of file grpprotein.cpp.

  : m_accession(other.m_accession),
    m_description(other.m_description),
    m_grpPeptidePtrList(other.m_grpPeptidePtrList)
{

~GrpProtein()

GrpProtein::~GrpProtein

(

)

Definition at line 45 of file grpprotein.cpp.

{

Member Function Documentation

begin()

const_iterator pappso::GrpProtein::begin ( ) const

inline

Definition at line 96 of file grpprotein.h.

countPlus()

void GrpProtein::countPlus ( )

protected

Definition at line 55 of file grpprotein.cpp.

{
  m_count++;

References m_count.

end()

const_iterator pappso::GrpProtein::end ( ) const

inline

Definition at line 101 of file grpprotein.h.

getAccession()

const QString & GrpProtein::getAccession

(

)

const

Definition at line 101 of file grpprotein.cpp.

{
  return m_accession;

References m_accession.

Referenced by pappso::GrpSubGroup::setSubGroupNumber().

getCount()

unsigned int GrpProtein::getCount

(

)

const

Definition at line 50 of file grpprotein.cpp.

{
  return m_count;

References m_count.

getDescription()

const QString & GrpProtein::getDescription

(

)

const

Definition at line 106 of file grpprotein.cpp.

{
  return m_description;

References m_description.

getGroupingId()

const QString GrpProtein::getGroupingId

(

)

const

Definition at line 82 of file grpprotein.cpp.

{
  if(m_groupNumber == 0)
    {
      return "";
    }
  return QString("%1.%2.%3")
    .arg(Utils::getLexicalOrderedString(m_groupNumber))
    .arg(Utils::getLexicalOrderedString(m_subGroupNumber))
    .arg(Utils::getLexicalOrderedString(m_rank));

References pappso::Utils::getLexicalOrderedString(), m_groupNumber, m_rank, and m_subGroupNumber.

getGroupNumber()

unsigned int GrpProtein::getGroupNumber

(

)

const

Definition at line 66 of file grpprotein.cpp.

{
  return m_groupNumber;

References m_groupNumber.

getRank()

unsigned int GrpProtein::getRank

(

)

const

Definition at line 77 of file grpprotein.cpp.

{
  return m_rank;

References m_rank.

getSubGroupNumber()

unsigned int GrpProtein::getSubGroupNumber

(

)

const

Definition at line 72 of file grpprotein.cpp.

{
  return m_subGroupNumber;

References m_subGroupNumber.

operator==()

bool GrpProtein::operator==

(

const GrpProtein &

other

)

const

Definition at line 94 of file grpprotein.cpp.

{
  return (m_accession == other.m_accession);

References m_accession.

push_back()

void GrpProtein::push_back

(

GrpPeptide *

p_grpPeptide

)

Definition at line 111 of file grpprotein.cpp.

{
  // p_grpPeptide->push_back(this);
  m_grpPeptidePtrList.push_back(p_grpPeptide);

References m_grpPeptidePtrList.

setGroupNumber()

void GrpProtein::setGroupNumber

(

unsigned int

i

)

Definition at line 136 of file grpprotein.cpp.

{
  m_groupNumber = i;

References m_groupNumber.

setRank()

void GrpProtein::setRank

(

unsigned int

i

)

Definition at line 131 of file grpprotein.cpp.

{
  m_rank = i;

References m_rank.

setSubGroupNumber()

void GrpProtein::setSubGroupNumber

(

unsigned int

i

)

Definition at line 60 of file grpprotein.cpp.

{
  m_subGroupNumber = i;

References m_subGroupNumber.

strip()

void GrpProtein::strip ( )

protected

ensure that each peptide in peptide list is unique and sorted by pointer adress

Definition at line 118 of file grpprotein.cpp.

{
  qDebug() << "GrpProtein::strip begin " << this->m_accession;
  // m_grpPeptidePtrList.sort();
  std::sort(m_grpPeptidePtrList.begin(), m_grpPeptidePtrList.end());
  // m_grpPeptidePtrList.unique();
  m_grpPeptidePtrList.erase(
    std::unique(m_grpPeptidePtrList.begin(), m_grpPeptidePtrList.end()),
    m_grpPeptidePtrList.end());
  qDebug() << "GrpProtein::strip end";

References m_accession, and m_grpPeptidePtrList.

Friends And Related Function Documentation

GrpExperiment

friend class GrpExperiment

friend

Definition at line 60 of file grpprotein.h.

Member Data Documentation

m_accession

const QString pappso::GrpProtein::m_accession

private

Definition at line 68 of file grpprotein.h.

Referenced by getAccession(), operator==(), and strip().

m_count

unsigned int pappso::GrpProtein::m_count = 0

private

Definition at line 66 of file grpprotein.h.

Referenced by countPlus(), and getCount().

m_description

const QString pappso::GrpProtein::m_description

private

Definition at line 69 of file grpprotein.h.

Referenced by getDescription().

m_groupNumber

unsigned int pappso::GrpProtein::m_groupNumber = 0

private

Definition at line 63 of file grpprotein.h.

Referenced by getGroupingId(), getGroupNumber(), and setGroupNumber().

m_grpPeptidePtrList

std::vector<GrpPeptide *> pappso::GrpProtein::m_grpPeptidePtrList

protected

Definition at line 82 of file grpprotein.h.

Referenced by push_back(), and strip().

m_rank

unsigned int pappso::GrpProtein::m_rank = 0

private

Definition at line 65 of file grpprotein.h.

Referenced by getGroupingId(), getRank(), and setRank().

m_subGroupNumber

unsigned int pappso::GrpProtein::m_subGroupNumber = 0

private

Definition at line 64 of file grpprotein.h.

Referenced by getGroupingId(), getSubGroupNumber(), and setSubGroupNumber().

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The documentation for this class was generated from the following files:

• pappsomspp/grouping/grpprotein.h
• pappsomspp/grouping/grpprotein.cpp