pappso::MsRunSimpleStatistics Class Reference

example of interface to count MS levels of all spectrum in an MSrun More...

#include <msrunreader.h>

Inheritance diagram for pappso::MsRunSimpleStatistics:

Public Member Functions
virtual void	setQualifiedMassSpectrum (const QualifiedMassSpectrum &spectrum) override
virtual bool	needPeakList () const override
	tells if we need the peak list (if we want the binary data) for each spectrum More...
virtual void	loadingEnded () override
unsigned long	getMsLevelCount (unsigned int ms_level) const
unsigned long	getTotalCount () const
Public Member Functions inherited from pappso::SpectrumCollectionHandlerInterface
virtual bool	needMsLevelPeakList (unsigned int ms_level) const final
	tells if we need the peak list (if we want the binary data) for each spectrum, given an MS level More...
virtual void	setNeedMsLevelPeakList (unsigned int ms_level, bool want_peak_list) final
	tells if we need the peak list given More...
virtual bool	shouldStop ()
virtual void	spectrumListHasSize (std::size_t size)
virtual void	setReadAhead (bool is_read_ahead) final
	use threads to read a spectrum by batch of batch_size More...
virtual bool	isReadAhead () const
	tells if we want to read ahead spectrum More...

Private Attributes
std::vector< unsigned long >	m_countMsLevelSpectrum

Detailed Description

example of interface to count MS levels of all spectrum in an MSrun

Definition at line 133 of file msrunreader.h.

Member Function Documentation

getMsLevelCount()

unsigned long pappso::MsRunSimpleStatistics::getMsLevelCount

(

unsigned int

ms_level

)

const

Definition at line 128 of file msrunreader.cpp.

{
  if(ms_level == 0)
    return 0;
  if(ms_level > m_countMsLevelSpectrum.size())
    return 0;
  return (m_countMsLevelSpectrum[ms_level - 1]);

References m_countMsLevelSpectrum.

getTotalCount()

unsigned long pappso::MsRunSimpleStatistics::getTotalCount

(

)

const

Definition at line 139 of file msrunreader.cpp.

{
  unsigned long total = 0;
  for(unsigned long count : m_countMsLevelSpectrum)
    {
      total += count;
    }
  return total;

References m_countMsLevelSpectrum.

loadingEnded()

void pappso::MsRunSimpleStatistics::loadingEnded ( )

overridevirtual

Reimplemented from pappso::SpectrumCollectionHandlerInterface.

Definition at line 105 of file msrunreader.cpp.

{
  qDebug() << __FILE__ << "@" << __LINE__ << __FUNCTION__ << "()"
           << "The data loading process ended.";

needPeakList()

bool pappso::MsRunSimpleStatistics::needPeakList ( ) const

overridevirtual

tells if we need the peak list (if we want the binary data) for each spectrum

Implements pappso::SpectrumCollectionHandlerInterface.

Definition at line 98 of file msrunreader.cpp.

{
  return false;

setQualifiedMassSpectrum()

void pappso::MsRunSimpleStatistics::setQualifiedMassSpectrum ( const QualifiedMassSpectrum &  spectrum )

overridevirtual

Implements pappso::SpectrumCollectionHandlerInterface.

Definition at line 113 of file msrunreader.cpp.

{
  unsigned int ms_level = qspectrum.getMsLevel();
  if(ms_level == 0)
    return;
  if(ms_level > m_countMsLevelSpectrum.size())
    {
      m_countMsLevelSpectrum.resize(ms_level);
    }
  m_countMsLevelSpectrum[ms_level - 1]++;

References pappso::QualifiedMassSpectrum::getMsLevel(), and m_countMsLevelSpectrum.

Member Data Documentation

m_countMsLevelSpectrum

std::vector<unsigned long> pappso::MsRunSimpleStatistics::m_countMsLevelSpectrum

private

Definition at line 136 of file msrunreader.h.

Referenced by getMsLevelCount(), getTotalCount(), and setQualifiedMassSpectrum().

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The documentation for this class was generated from the following files:

• pappsomspp/msrun/msrunreader.h
• pappsomspp/msrun/msrunreader.cpp