pappso::MsRunXicExtractorFactory Class Reference

factory to build different kinds of XIC extractors More...

#include <msrunxicextractorfactory.h>

Public Member Functions
MsRunXicExtractorInterfaceSp	buildMsRunXicExtractorSp (MsRunReaderSPtr &msrun_reader) const
	build a simple XIC extractor that directly uses Proeowizard library to read and extract XICs building the xic extractor is fast, but extracting each XIC is slow More...
MsRunXicExtractorInterfaceSp	buildMsRunXicExtractorDiskSp (MsRunReaderSPtr &msrun_reader) const
	build Xic extractor that first read the whole MsRun, put it on disk and extract XICs more quickly This needs some space on disk to store slices (1 dalton each) building the XIC extractor is slow extracting XIC from slices is a very quick operation More...
MsRunXicExtractorInterfaceSp	buildMsRunXicExtractorDiskBufferSp (MsRunReaderSPtr &msrun_reader) const
	build Xic extractor that first read the whole MsRun, put it on disk using a write cache and extract XICs more quickly This needs some space on disk to store slices (1 dalton each) building the XIC extractor is slower than buildMsRunXicExtractorPwizSp, but faster than buildMsRunXicExtractorDiskSp extracting XIC from slices is a very quick operation More...
void	setTmpDir (const QString &dir_name)
	set the temporary working directory More...

Static Public Member Functions
static MsRunXicExtractorFactory &	getInstance ()
	singleton to get the only instance of the factory More...

Private Member Functions
	MsRunXicExtractorFactory ()
virtual	~MsRunXicExtractorFactory ()

Private Attributes
QString	m_tmpDirName

Static Private Attributes
static MsRunXicExtractorFactory	m_instance

Detailed Description

factory to build different kinds of XIC extractors

Definition at line 59 of file msrunxicextractorfactory.h.

Constructor & Destructor Documentation

MsRunXicExtractorFactory()

pappso::MsRunXicExtractorFactory::MsRunXicExtractorFactory ( )

private

Definition at line 70 of file msrunxicextractorfactory.cpp.

{

~MsRunXicExtractorFactory()

pappso::MsRunXicExtractorFactory::~MsRunXicExtractorFactory ( )

privatevirtual

Definition at line 73 of file msrunxicextractorfactory.cpp.

{
  std::shared_ptr<MsRunXicExtractorDisk> msrun_xic_extractor_sp =

References m_tmpDirName.

Member Function Documentation

buildMsRunXicExtractorDiskBufferSp()

MsRunXicExtractorInterfaceSp pappso::MsRunXicExtractorFactory::buildMsRunXicExtractorDiskBufferSp

(

MsRunReaderSPtr &

msrun_reader

)

const

build Xic extractor that first read the whole MsRun, put it on disk using a write cache and extract XICs more quickly This needs some space on disk to store slices (1 dalton each) building the XIC extractor is slower than buildMsRunXicExtractorPwizSp, but faster than buildMsRunXicExtractorDiskSp extracting XIC from slices is a very quick operation

Parameters

msrun_reader

the MsRun reader on which the XIC extractor will run

Definition at line 104 of file msrunxicextractorfactory.cpp.

buildMsRunXicExtractorDiskSp()

MsRunXicExtractorInterfaceSp pappso::MsRunXicExtractorFactory::buildMsRunXicExtractorDiskSp

(

MsRunReaderSPtr &

msrun_reader

)

const

build Xic extractor that first read the whole MsRun, put it on disk and extract XICs more quickly This needs some space on disk to store slices (1 dalton each) building the XIC extractor is slow extracting XIC from slices is a very quick operation

Parameters

msrun_reader

the MsRun reader on which the XIC extractor will run

Definition at line 92 of file msrunxicextractorfactory.cpp.

buildMsRunXicExtractorSp()

MsRunXicExtractorInterfaceSp pappso::MsRunXicExtractorFactory::buildMsRunXicExtractorSp

(

MsRunReaderSPtr &

msrun_reader

)

const

build a simple XIC extractor that directly uses Proeowizard library to read and extract XICs building the xic extractor is fast, but extracting each XIC is slow

Parameters

msrun_reader

the MsRun reader on which the XIC extractor will run

Definition at line 83 of file msrunxicextractorfactory.cpp.

{
  std::shared_ptr<MsRunXicExtractorDiskBuffer> msrun_xic_extractor_sp =
    std::make_shared<MsRunXicExtractorDiskBuffer>(
      MsRunXicExtractorDiskBuffer(msrun_reader, QDir(m_tmpDirName)));

References m_tmpDirName.

getInstance()

MsRunXicExtractorFactory & pappso::MsRunXicExtractorFactory::getInstance ( )

static

singleton to get the only instance of the factory

Definition at line 64 of file msrunxicextractorfactory.cpp.

{
  std::shared_ptr<MsRunXicExtractor> msrun_xic_extractor_sp =
    std::make_shared<MsRunXicExtractor>(MsRunXicExtractor(msrun_reader));

setTmpDir()

void pappso::MsRunXicExtractorFactory::setTmpDir

(

const QString &

dir_name

)

set the temporary working directory

Definition at line 78 of file msrunxicextractorfactory.cpp.

Member Data Documentation

m_instance

MsRunXicExtractorFactory pappso::MsRunXicExtractorFactory::m_instance

staticprivate

Initial value:

=
  MsRunXicExtractorFactory()

Definition at line 82 of file msrunxicextractorfactory.h.

m_tmpDirName

QString pappso::MsRunXicExtractorFactory::m_tmpDirName

private

Definition at line 83 of file msrunxicextractorfactory.h.

Referenced by buildMsRunXicExtractorSp(), and ~MsRunXicExtractorFactory().

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The documentation for this class was generated from the following files:

• pappsomspp/xicextractor/msrunxicextractorfactory.h
• pappsomspp/xicextractor/msrunxicextractorfactory.cpp