This is the complete list of members for vg::HaplotypeIndexer, including all inherited members.
| batch_file_prefix | vg::HaplotypeIndexer | |
| build_gbwt(const PathHandleGraph *graph, map< string, Path > &alt_paths, bool index_paths, const string &vcf_filename, const vector< string > &gam_filenames) | vg::HaplotypeIndexer | |
| create_progress(const string &message, long count) | vg::Progressive | |
| create_progress(long count) | vg::Progressive | |
| destroy_progress(void) | vg::Progressive | |
| discard_overlaps | vg::HaplotypeIndexer | |
| excluded_samples | vg::HaplotypeIndexer | |
| force_phasing | vg::HaplotypeIndexer | |
| found_missing_variants | vg::HaplotypeIndexer | |
| gbwt_buffer_size | vg::HaplotypeIndexer | |
| generate_threads(const PathHandleGraph *graph, map< string, Path > &alt_paths, bool index_paths, const string &vcf_filename, const vector< string > &gam_filenames, const function< void(size_t)> &bit_width_ready, const function< void(const gbwt::vector_type &, const gbwt::size_type(&)[4])> &each_thread) | vg::HaplotypeIndexer | |
| HaplotypeIndexer() | vg::HaplotypeIndexer | |
| id_interval | vg::HaplotypeIndexer | |
| increment_progress() | vg::Progressive | |
| index_paths | vg::HaplotypeIndexer | |
| last_progress | vg::Progressive | private |
| max_missing_variant_warnings | vg::HaplotypeIndexer | |
| parse_vcf(const PathHandleGraph *graph, map< string, Path > &alt_paths, const vector< path_handle_t > &contigs, vcflib::VariantCallFile &variant_file, std::vector< std::string > &sample_names, const function< void(size_t, const gbwt::VariantPaths &, gbwt::PhasingInformation &)> &handle_contig_haplotype_batch) | vg::HaplotypeIndexer | |
| path_to_vcf | vg::HaplotypeIndexer | |
| phase_homozygous | vg::HaplotypeIndexer | |
| preload_progress(const string &message) | vg::Progressive | |
| progress | vg::Progressive | private |
| progress_count | vg::Progressive | private |
| progress_message | vg::Progressive | private |
| progress_seen | vg::Progressive | private |
| regions | vg::HaplotypeIndexer | |
| rename_variants | vg::HaplotypeIndexer | |
| sample_range | vg::HaplotypeIndexer | |
| samples_in_batch | vg::HaplotypeIndexer | |
| show_progress | vg::Progressive | |
| update_progress(long i) | vg::Progressive | |
| warn_on_missing_variants | vg::HaplotypeIndexer | |
