gbwt_helper.cpp File Reference

#include "gbwt_helper.hpp"
#include "utility.hpp"
#include <sstream>

Namespaces
	vg

Functions
std::vector< std::string >	vg::parseGenotypes (const std::string &vcf_line, size_t num_samples)
std::string	vg::insert_gbwt_path (MutablePathHandleGraph &graph, const gbwt::GBWT &gbwt_index, gbwt::size_type id)
Path	vg::extract_gbwt_path (const HandleGraph &graph, const gbwt::GBWT &gbwt_index, gbwt::size_type id)
std::string	vg::thread_name (const gbwt::GBWT &gbwt_index, gbwt::size_type id)
gbwt::GBWT	vg::get_gbwt (const std::vector< gbwt::vector_type > &paths)
	Transform the paths into a GBWT index. Primarily for testing. More...