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Parallel BetweennessΒΆ
Example of parallel implementation of betweenness centrality using the multiprocessing module from Python Standard Library.
The function betweenness centrality accepts a bunch of nodes and computes the contribution of those nodes to the betweenness centrality of the whole network. Here we divide the network in chunks of nodes and we compute their contribution to the betweenness centrality of the whole network.
Out:
Computing betweenness centrality for:
Name:
Type: Graph
Number of nodes: 1000
Number of edges: 2991
Average degree: 5.9820
Parallel version
Time: 1.3455 seconds
Betweenness centrality for node 0: 0.00041
Non-Parallel version
Time: 4.3295 seconds
Betweenness centrality for node 0: 0.00041
Computing betweenness centrality for:
Name:
Type: Graph
Number of nodes: 1000
Number of edges: 4879
Average degree: 9.7580
Parallel version
Time: 1.6566 seconds
Betweenness centrality for node 0: 0.00228
Non-Parallel version
Time: 5.8476 seconds
Betweenness centrality for node 0: 0.00228
Computing betweenness centrality for:
Name:
Type: Graph
Number of nodes: 1000
Number of edges: 2000
Average degree: 4.0000
Parallel version
Time: 1.1956 seconds
Betweenness centrality for node 0: 0.01134
Non-Parallel version
Time: 3.8865 seconds
Betweenness centrality for node 0: 0.01134
from multiprocessing import Pool
import time
import itertools
import matplotlib.pyplot as plt
import networkx as nx
def chunks(l, n):
"""Divide a list of nodes `l` in `n` chunks"""
l_c = iter(l)
while 1:
x = tuple(itertools.islice(l_c, n))
if not x:
return
yield x
def betweenness_centrality_parallel(G, processes=None):
"""Parallel betweenness centrality function"""
p = Pool(processes=processes)
node_divisor = len(p._pool) * 4
node_chunks = list(chunks(G.nodes(), int(G.order() / node_divisor)))
num_chunks = len(node_chunks)
bt_sc = p.starmap(
nx.betweenness_centrality_subset,
zip(
[G] * num_chunks,
node_chunks,
[list(G)] * num_chunks,
[True] * num_chunks,
[None] * num_chunks,
),
)
# Reduce the partial solutions
bt_c = bt_sc[0]
for bt in bt_sc[1:]:
for n in bt:
bt_c[n] += bt[n]
return bt_c
G_ba = nx.barabasi_albert_graph(1000, 3)
G_er = nx.gnp_random_graph(1000, 0.01)
G_ws = nx.connected_watts_strogatz_graph(1000, 4, 0.1)
for G in [G_ba, G_er, G_ws]:
print("")
print("Computing betweenness centrality for:")
print(nx.info(G))
print("\tParallel version")
start = time.time()
bt = betweenness_centrality_parallel(G)
print(f"\t\tTime: {(time.time() - start):.4F} seconds")
print(f"\t\tBetweenness centrality for node 0: {bt[0]:.5f}")
print("\tNon-Parallel version")
start = time.time()
bt = nx.betweenness_centrality(G)
print(f"\t\tTime: {(time.time() - start):.4F} seconds")
print(f"\t\tBetweenness centrality for node 0: {bt[0]:.5f}")
print("")
nx.draw(G_ba, node_size=100)
plt.show()
Total running time of the script: ( 0 minutes 29.188 seconds)