Package org.broad.tribble.util

Class SeekableFileStream

  • All Implemented Interfaces:
    java.io.Closeable, java.lang.AutoCloseable
    public class SeekableFileStream
extends SeekableStream
    Author:
    jrobinso

    • Constructor Summary

      Constructors 
      Constructor Description
      SeekableFileStream​(java.io.File file)  

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      int available()  
      void close()  
      boolean eof()  
      long length()  
      void mark​(int readlimit)  
      boolean markSupported()  
      long position()  
      int read()  
      int read​(byte[] b)  
      int read​(byte[] buffer, int offset, int length)  
      void reset()  
      void seek​(long position)  
      long skip​(long n)  

      • Methods inherited from class java.io.InputStream

        nullInputStream, readAllBytes, readNBytes, readNBytes, transferTo

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

      • SeekableFileStream

        public SeekableFileStream​(java.io.File file)
                   throws java.io.FileNotFoundException
        Throws:
        java.io.FileNotFoundException

    • Method Detail

      • eof

        public boolean eof()
            throws java.io.IOException
        Specified by:
        eof in class SeekableStream
        Throws:
        java.io.IOException

      • seek

        public void seek​(long position)
          throws java.io.IOException
        Specified by:
        seek in class SeekableStream
        Throws:
        java.io.IOException

      • position

        public long position()
              throws java.io.IOException
        Specified by:
        position in class SeekableStream
        Throws:
        java.io.IOException

      • skip

        public long skip​(long n)
          throws java.io.IOException
        Overrides:
        skip in class java.io.InputStream
        Throws:
        java.io.IOException

      • read

        public int read​(byte[] buffer,
                int offset,
                int length)
         throws java.io.IOException
        Overrides:
        read in class java.io.InputStream
        Throws:
        java.io.IOException

      • read

        public int read()
         throws java.io.IOException
        Specified by:
        read in class java.io.InputStream
        Throws:
        java.io.IOException

      • read

        public int read​(byte[] b)
         throws java.io.IOException
        Overrides:
        read in class java.io.InputStream
        Throws:
        java.io.IOException

      • available

        public int available()
              throws java.io.IOException
        Overrides:
        available in class java.io.InputStream
        Throws:
        java.io.IOException

      • mark

        public void mark​(int readlimit)
        Overrides:
        mark in class java.io.InputStream

      • markSupported

        public boolean markSupported()
        Overrides:
        markSupported in class java.io.InputStream

      • reset

        public void reset()
           throws java.io.IOException
        Overrides:
        reset in class java.io.InputStream
        Throws:
        java.io.IOException

      • close

        public void close()
           throws java.io.IOException
        Specified by:
        close in interface java.lang.AutoCloseable
        Specified by:
        close in interface java.io.Closeable
        Overrides:
        close in class java.io.InputStream
        Throws:
        java.io.IOException