MasterVcf (Snp Effect 4.3t API)

java.lang.Object
- org.snpeff.akka.ConcurrentActor
- - org.snpeff.akka.Master<VcfEntry,T>
  - - org.snpeff.akka.vcf.MasterVcf<T>

All Implemented Interfaces:

java.lang.Iterable<VcfEntry>, java.util.Iterator<VcfEntry>

Direct Known Subclasses:

MasterEff, MasterVcfStr
```
public class MasterVcf<T>
extends Master<VcfEntry,T>
```
A master that prcess VCF files

Author:

pablocingolani

Field Summary

Fields
Modifier and Type	Field	Description
`protected java.lang.String[]`	`addHeader`
`protected boolean`	`parseNow`
`protected boolean`	`showHeader`
`protected VcfFileIterator`	`vcfFileIterator`

Fields inherited from class org.snpeff.akka.Master
batchSize, completion, countInputObjects, debug, DEFAULT_BATCH_SIZE, DEFAULT_SHOW_EVERY, LOAD_FACTOR, nextOutput, numWorkers, pool, props, sentWorks, showEvery, worksBySerial

Constructor Summary

Constructors
Constructor Description

MasterVcf(ConcurrentProperties props, int numWorkers)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`boolean`	`hasNext()`
`VcfEntry`	`next()`	Get next item
`void`	`setAddHeader(java.lang.String[] addHeader)`
`void`	`setShowHeader(boolean showHeader)`
`protected void`	`startMaster(StartMaster startMaster)`	Start up processing

Methods inherited from class org.snpeff.akka.Master
get, iterableWork, iterator, output, output, processResults, remove

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.lang.Iterable
forEach, spliterator

Methods inherited from interface java.util.Iterator
forEachRemaining

- Field Detail
  - parseNow
```
protected boolean parseNow
```
  - showHeader
```
protected boolean showHeader
```
  - addHeader
```
protected java.lang.String[] addHeader
```
  - vcfFileIterator
```
protected VcfFileIterator vcfFileIterator
```
- Constructor Detail
  - MasterVcf
```
public MasterVcf(ConcurrentProperties props,
                 int numWorkers)
```
- Method Detail
  - hasNext
```
public boolean hasNext()
```
    Specified by:
    
    hasNext in interface java.util.Iterator<T>
    
    Specified by:
    
    hasNext in class Master<VcfEntry,T>
  - next
```
public VcfEntry next()
```
    Description copied from class: Master
    
    Get next item
    
    Specified by:
    
    next in interface java.util.Iterator<T>
    
    Specified by:
    
    next in class Master<VcfEntry,T>
  - setAddHeader
```
public void setAddHeader(java.lang.String[] addHeader)
```
  - setShowHeader
```
public void setShowHeader(boolean showHeader)
```
  - startMaster
```
protected void startMaster(StartMaster startMaster)
```
    Start up processing
    
    Overrides:
    
    startMaster in class Master<VcfEntry,T>