Uses of Class
org.snpeff.interval.tree.IntervalForest

Packages that use IntervalForest

Package	Description
org.snpeff.interval
org.snpeff.snpEffect
org.snpeff.snpEffect.commandLine.eff

Uses of IntervalForest in org.snpeff.interval

Methods in org.snpeff.interval with parameters of type IntervalForest

Modifier and Type	Method	Description
Markers	Marker.query(IntervalForest intervalForest)	Return a collection of intervals that intersect this marker
Markers	VariantBnd.query(IntervalForest intervalForest)	Return a collection of intervals that intersect both ends of this variant

Uses of IntervalForest in org.snpeff.snpEffect

Methods in org.snpeff.snpEffect that return IntervalForest

Modifier and Type	Method	Description
IntervalForest	SnpEffectPredictor.getIntervalForest()

Uses of IntervalForest in org.snpeff.snpEffect.commandLine.eff

Constructors in org.snpeff.snpEffect.commandLine.eff with parameters of type IntervalForest

Constructor	Description
MasterEff(int numWorkers, SnpEffCmdEff snpEffCmdEff, SnpEffectPredictor snpEffectPredictor, OutputFormatter outputFormatter, IntervalForest filterIntervals)
WorkerEff(SnpEffCmdEff snpEffCmdEff, SnpEffectPredictor snpEffectPredictor, OutputFormatter outputFormatter, IntervalForest filterIntervals)