Uses of Class
org.snpeff.snpEffect.VariantEffect.ErrorWarningType

Packages that use VariantEffect.ErrorWarningType

Package	Description
org.snpeff.interval
org.snpeff.snpEffect
org.snpeff.snpEffect.testCases.integration

Uses of VariantEffect.ErrorWarningType in org.snpeff.interval

Methods in org.snpeff.interval that return VariantEffect.ErrorWarningType

Modifier and Type	Method	Description
VariantEffect.ErrorWarningType	Exon.sanityCheck(Variant variant)	Check that the base in the exon corresponds with the one in the SNP
VariantEffect.ErrorWarningType	Transcript.sanityCheck(Variant variant)	Perfom some baseic chekcs, return error type, if any

Uses of VariantEffect.ErrorWarningType in org.snpeff.snpEffect

Methods in org.snpeff.snpEffect that return VariantEffect.ErrorWarningType

Modifier and Type	Method	Description
static VariantEffect.ErrorWarningType	VariantEffect.ErrorWarningType.valueOf(java.lang.String name)	Returns the enum constant of this type with the specified name.
static VariantEffect.ErrorWarningType[]	VariantEffect.ErrorWarningType.values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods in org.snpeff.snpEffect with parameters of type VariantEffect.ErrorWarningType

Modifier and Type	Method	Description
void	VariantEffect.addErrorMessage(VariantEffect.ErrorWarningType errmsg)
void	VariantEffects.addErrorWarning(Variant variant, VariantEffect.ErrorWarningType errwarn)
void	VariantEffect.addErrorWarningInfo(VariantEffect.ErrorWarningType errwarn)	Add an error or warning
void	VariantEffect.addInfoMessage(VariantEffect.ErrorWarningType infomsg)
void	VariantEffect.addWarningMessge(VariantEffect.ErrorWarningType warnmsg)

Uses of VariantEffect.ErrorWarningType in org.snpeff.snpEffect.testCases.integration

Methods in org.snpeff.snpEffect.testCases.integration with parameters of type VariantEffect.ErrorWarningType

Modifier and Type	Method	Description
void	TestCasesIntegrationBase.checkTranscriptError(java.lang.String[] args, VariantEffect.ErrorWarningType warningType)	Run a predictor and check if the expected warnings appear