TestCasesIntegrationNextProt (Snp Effect 4.3t API)

java.lang.Object
- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
- - org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationNextProt

public class TestCasesIntegrationNextProt
extends TestCasesIntegrationBase

Test NextProt databases

Author:: pcingola

Field Summary
- Fields inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
  debug, ignoreErrors, shiftHgvs, SHOW_EVERY, testsDir, verbose

Constructor Summary

Constructors
Constructor Description

TestCasesIntegrationNextProt()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`test_01_build()`
`void`	`test_02_ann()`
`void`	`test_02_eff()`
`void`	`test_03_ann()`
`void`	`test_03_eff()`
`void`	`test_04_parse()`

Methods inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
appyTranscript, build, buildAndCompare, buildEmbl, buildGeneBank, buildGff3AndCompare, buildGtfAndCompare, checkHgvs, checkNoChange, checkTranscriptError, compareHgvs, compareHgvs, compareVep, compareVepSO, init, loadSnpEffectPredictor, showTranscripts, showTranscripts, snpEffect, snpEffect, snpEffectCancer

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- TestCasesIntegrationNextProt
```
public TestCasesIntegrationNextProt()
```

Method Detail

test_01_build
```
public void test_01_build()
```

test_02_ann
```
public void test_02_ann()
```

test_02_eff
```
public void test_02_eff()
```

test_03_ann
```
public void test_03_ann()
```

test_03_eff
```
public void test_03_eff()
```

test_04_parse
```
public void test_04_parse()
```