Package org.snpeff.snpEffect.testCases.unity

Class TestCasesFileIndexChrPos

java.lang.Object

org.snpeff.snpEffect.testCases.unity.TestCasesFileIndexChrPos

public class TestCasesFileIndexChrPos
extends java.lang.Object

Test cases for file index (chr:pos index on files)

Author:

pcingola

Constructor Summary

Constructors

Constructor	Description
TestCasesFileIndexChrPos()

Method Summary

Modifier and Type	Method	Description
void	test_00_long_file()	Test getting random lines from a file
void	test_00_short_file()	Test getting random lines from a file
void	test_01()	Test : Find beginning of a chromosome
void	test_02()	Test : Find a line
void	test_03()	Test : Find a chr:pos
void	test_04()	Test : Find a chr:pos
void	test_05()	Test : Find a chr:pos that does not exists
void	test_06()	Test : Find a chr:pos that does not exists
void	test_07()	Test : Find a chr:pos that does not exists
void	test_10()
void	test_11()	Test : Find a chr:pos that does not exists
void	test_20()	Test : Find a chr:pos that does not exists
void	test_21()	Test : Find a chr:pos that does not exists
void	test_22()	Test : Find a chr:pos that does not exists
void	test_23()	Test : Dump small portions of a file
void	test_24()	Test : Dump large portions of a file

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TestCasesFileIndexChrPos

public TestCasesFileIndexChrPos()

Method Detail

test_00_long_file

public void test_00_long_file()
                       throws java.io.IOException

Test getting random lines from a file

Throws:

java.io.IOException

test_00_short_file

public void test_00_short_file()
                        throws java.io.IOException

Test getting random lines from a file

Throws:

java.io.IOException

test_01

public void test_01()
             throws java.io.IOException

Test : Find beginning of a chromosome

Throws:

java.io.IOException

test_02

public void test_02()
             throws java.io.IOException

Test : Find a line

Throws:

java.io.IOException

test_03

public void test_03()
             throws java.io.IOException

Test : Find a chr:pos

Throws:

java.io.IOException

test_04

public void test_04()
             throws java.io.IOException

Test : Find a chr:pos

Throws:

java.io.IOException

test_05

public void test_05()
             throws java.io.IOException

Test : Find a chr:pos that does not exists

Throws:

java.io.IOException

test_06

public void test_06()
             throws java.io.IOException

Test : Find a chr:pos that does not exists

Throws:

java.io.IOException

test_07

public void test_07()
             throws java.io.IOException

Test : Find a chr:pos that does not exists

Throws:

java.io.IOException

test_10

public void test_10()
             throws java.io.IOException

Throws:

java.io.IOException

test_11

public void test_11()
             throws java.io.IOException

Test : Find a chr:pos that does not exists

Throws:

java.io.IOException

test_20

public void test_20()
             throws java.io.IOException

Test : Find a chr:pos that does not exists

Throws:

java.io.IOException

test_21

public void test_21()
             throws java.io.IOException

Test : Find a chr:pos that does not exists

Throws:

java.io.IOException

test_22

public void test_22()
             throws java.io.IOException

Test : Find a chr:pos that does not exists

Throws:

java.io.IOException

test_23

public void test_23()
             throws java.io.IOException

Test : Dump small portions of a file

Throws:

java.io.IOException

test_24

public void test_24()
             throws java.io.IOException

Test : Dump large portions of a file

Throws:

java.io.IOException