TestCasesHgvsDnaDupNegative (Snp Effect 4.3t API)

java.lang.Object
- org.snpeff.snpEffect.testCases.unity.TestCasesBase
- - org.snpeff.snpEffect.testCases.unity.TestCasesHgvsDnaDupNegative

public class TestCasesHgvsDnaDupNegative
extends TestCasesBase

Test cases for HGVS's 'dup' on the negative strand

Field Summary
- Fields inherited from class org.snpeff.snpEffect.testCases.unity.TestCasesBase
  addUtrs, chromoBases, chromoSequence, chromosome, codonTable, config, debug, gene, genome, genomeName, maxExons, maxGeneLen, maxTranscripts, minExons, numGenes, onlyMinusStrand, onlyPlusStrand, rand, randSeed, shiftHgvs, snpEffectPredictor, spliceRegionExonSize, spliceRegionIntronMax, spliceRegionIntronMin, transcript, verbose

Constructor Summary

Constructors
Constructor Description

TestCasesHgvsDnaDupNegative()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected void`	`init()`
`void`	`test_01()`
`void`	`test_02()`
`void`	`test_03()`	Dup on the reverse strand: More than one base
`void`	`test_04()`	Dup on the reverse strand: More than one base

Methods inherited from class org.snpeff.snpEffect.testCases.unity.TestCasesBase
after, before, checkApply, checkApplyDel, checkApplyIns, checkApplyMixed, checkApplyMnp, checkApplySnp, checkEffect, checkEffect, formatVersion, hasEffect, initRand, initSnpEffPredictor, initSnpEffPredictor, prependSequenceToFirstExon, showTranscripts

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - TestCasesHgvsDnaDupNegative
```
public TestCasesHgvsDnaDupNegative()
```
- Method Detail
  - init
```
protected void init()
```
    Overrides:
    
    init in class TestCasesBase
  - test_01
```
public void test_01()
```
  - test_02
```
public void test_02()
```
  - test_03
```
public void test_03()
```
    Dup on the reverse strand: More than one base
  - test_04
```
public void test_04()
```
    Dup on the reverse strand: More than one base