Package org.snpeff.snpEffect.testCases.unity

Class TestCasesIntervalVariant

java.lang.Object

org.snpeff.snpEffect.testCases.unity.TestCasesBase

org.snpeff.snpEffect.testCases.unity.TestCasesIntervalVariant

public class TestCasesIntervalVariant
extends TestCasesBase

Test random Interval Variants (e.g. when reading a BED file)

Author:

pcingola

Field Summary

Fields

Modifier and Type	Field	Description
static int	N

Fields inherited from class org.snpeff.snpEffect.testCases.unity.TestCasesBase

addUtrs, chromoBases, chromoSequence, chromosome, codonTable, config, debug, gene, genome, genomeName, maxExons, maxGeneLen, maxTranscripts, minExons, numGenes, onlyMinusStrand, onlyPlusStrand, rand, randSeed, shiftHgvs, snpEffectPredictor, spliceRegionExonSize, spliceRegionIntronMax, spliceRegionIntronMin, transcript, verbose

Constructor Summary

Constructors

Constructor	Description
TestCasesIntervalVariant()

Method Summary

Modifier and Type	Method	Description
protected void	init()
void	test_01()

Methods inherited from class org.snpeff.snpEffect.testCases.unity.TestCasesBase

after, before, checkApply, checkApplyDel, checkApplyIns, checkApplyMixed, checkApplyMnp, checkApplySnp, checkEffect, checkEffect, formatVersion, hasEffect, initRand, initSnpEffPredictor, initSnpEffPredictor, prependSequenceToFirstExon, showTranscripts

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

N

public static int N

Constructor Detail

TestCasesIntervalVariant

public TestCasesIntervalVariant()

Method Detail

init

protected void init()

Overrides:

init in class TestCasesBase

test_01

public void test_01()