vg::HaplotypeIndexer Member List

This is the complete list of members for vg::HaplotypeIndexer, including all inherited members.

batch_file_prefix	vg::HaplotypeIndexer
build_gbwt(PathHandleGraph *graph, std::string vcf_filename, bool delete_graph) const	vg::HaplotypeIndexer
build_gbwt(const PathHandleGraph *graph) const	vg::HaplotypeIndexer
build_gbwt(const PathHandleGraph *graph, const std::vector< std::string > &aln_filenames, const std::string &aln_format) const	vg::HaplotypeIndexer
create_progress(const string &message, long count)	vg::Progressive
create_progress(long count)	vg::Progressive
destroy_progress(void)	vg::Progressive
discard_overlaps	vg::HaplotypeIndexer
excluded_samples	vg::HaplotypeIndexer
force_phasing	vg::HaplotypeIndexer
gbwt_buffer_size	vg::HaplotypeIndexer
HaplotypeIndexer()	vg::HaplotypeIndexer
id_interval	vg::HaplotypeIndexer
increment_progress()	vg::Progressive
last_progress	vg::Progressive	private
max_missing_variant_warnings	vg::HaplotypeIndexer
parse_vcf(PathHandleGraph *graph, const std::vector< path_handle_t > &contigs, vcflib::VariantCallFile &variant_file, std::vector< std::string > &sample_names, const function< void(size_t, const gbwt::VariantPaths &, gbwt::PhasingInformation &)> &handle_contig_haplotype_batch, bool delete_graph) const	vg::HaplotypeIndexer
path_to_vcf	vg::HaplotypeIndexer
paths_as_samples	vg::HaplotypeIndexer
phase_homozygous	vg::HaplotypeIndexer
preload_progress(const string &message)	vg::Progressive
progress	vg::Progressive	private
progress_count	vg::Progressive	private
progress_message	vg::Progressive	private
progress_seen	vg::Progressive	private
regions	vg::HaplotypeIndexer
rename_variants	vg::HaplotypeIndexer
sample_range	vg::HaplotypeIndexer
samples_in_batch	vg::HaplotypeIndexer
show_progress	vg::Progressive
update_progress(long i)	vg::Progressive
warn_on_missing_variants	vg::HaplotypeIndexer