gbwt_main.cpp File Reference

#include <omp.h>
#include <unistd.h>
#include <getopt.h>
#include <list>
#include <fstream>
#include "subcommand.hpp"
#include "../gbwt_helper.hpp"
#include <vg/io/vpkg.hpp>
#include <bdsg/overlays/overlay_helper.hpp>
#include <gbwtgraph/gbwtgraph.h>
#include <gbwtgraph/path_cover.h>

Enumerations
enum	operation_mode {   operation_none, operation_merge, operation_graph, operation_remove,   operation_other }
enum	path_cover_mode { path_cover_none, path_cover_augment, path_cover_local, path_cover_greedy }

Functions
void	help_gbwt (char **argv)
int	main_gbwt (int argc, char **argv)

Detailed Description

Defines the "vg gbwt" subcommand, which wraps up access for commands we'd otherwise find in the gbwt submodule.

Enumeration Type Documentation

operation_mode

enum operation_mode

Enumerator
operation_none
operation_merge
operation_graph
operation_remove
operation_other

path_cover_mode

enum path_cover_mode

Enumerator
path_cover_none
path_cover_augment
path_cover_local
path_cover_greedy

Function Documentation

help_gbwt()

void help_gbwt

(

char **

argv

)

main_gbwt()

int main_gbwt	(	int	argc,
		char **	argv
	)