bdsg Namespace Reference

Namespaces
	algorithms

Classes
class	HashGraph
class	ODGI
class	PackedGraph

Typedefs
using	nid_t = handlegraph::nid_t

Functions
char	reverse_complement (const char &c)
string	reverse_complement (const string &seq)
void	reverse_complement_in_place (string &seq)
bool	is_all_n (const string &seq)
bool	allATGC (const string &s)
bool	allATGCN (const string &s)
string	nonATGCNtoN (const string &s)
string	toUppercase (const string &s)
string	format_memory (size_t s)
int	get_thread_count (void)

Typedef Documentation

nid_t

using bdsg::nid_t = typedef handlegraph::nid_t

Function Documentation

allATGC()

bool bdsg::allATGC

(

const string &

s

)

allATGCN()

bool bdsg::allATGCN

(

const string &

s

)

format_memory()

string bdsg::format_memory

(

size_t

s

)

get_thread_count()

int bdsg::get_thread_count

(

void

)

is_all_n()

bool bdsg::is_all_n

(

const string &

seq

)

nonATGCNtoN()

string bdsg::nonATGCNtoN

(

const string &

s

)

reverse_complement() [1/2]

char bdsg::reverse_complement

(

const char &

c

)

reverse_complement() [2/2]

string bdsg::reverse_complement

(

const string &

seq

)

reverse_complement_in_place()

void bdsg::reverse_complement_in_place

(

string &

seq

)

toUppercase()

string bdsg::toUppercase

(

const string &

s

)